Anne-Marie Carpenter

Anne-Marie Carpenter, MD

University Of Florida College Of Medicine

Department: MD-SURGERY-RESIDENCY PROGRAM
Business Phone: (352) 413-6372
Business Email: acarpenter@ufl.edu

Publications

2021
Racial Disparity in Liver Transplantation Listing.
Journal of the American College of Surgeons. 232(4):526-534 [DOI] 10.1016/j.jamcollsurg.2020.12.021. [PMID] 33444709.
2020
Liver-on-a-Chip Models of Fatty Liver Disease.
Hepatology (Baltimore, Md.). 71(2):733-740 [DOI] 10.1002/hep.31106. [PMID] 31909504.
2018
A Comparison of Pathophysiology in Humans and Rodent Models of Subarachnoid Hemorrhage.
Frontiers in molecular neuroscience. 11 [DOI] 10.3389/fnmol.2018.00071. [PMID] 29623028.
2018
Diagnostic Potential of Imaging Flow Cytometry.
Trends in biotechnology. 36(7):649-652 [DOI] 10.1016/j.tibtech.2017.12.008. [PMID] 29395345.
2018
Endoscopic Dilation of Bariatric RNY Anastomotic Strictures: a Systematic Review and Meta-analysis.
Obesity surgery. 28(12):4053-4063 [DOI] 10.1007/s11695-018-3491-6. [PMID] 30244332.
2018
Gender Diversity in General Surgery Residency Leadership.
Journal of surgical education. 75(6):e68-e71 [DOI] 10.1016/j.jsurg.2018.07.021. [PMID] 30177356.
2018
Weakly Supervised Learning of Single-Cell Feature Embeddings.
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 2018:9309-9318 [DOI] 10.1109/CVPR.2018.00970. [PMID] 30918435.
2017
An open-source solution for advanced imaging flow cytometry data analysis using machine learning.
Methods (San Diego, Calif.). 112:201-210 [DOI] 10.1016/j.ymeth.2016.08.018. [PMID] 27594698.
2017
The Curious Case of the Uterine Cyst.
Journal of minimally invasive gynecology. 24(6):884-885 [DOI] 10.1016/j.jmig.2016.11.017. [PMID] 28007590.
2016
An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells.
Experimental eye research. 147:50-56 [DOI] 10.1016/j.exer.2016.04.012. [PMID] 27119563.
2016
Applications in image-based profiling of perturbations.
Current opinion in biotechnology. 39:134-142 [DOI] 10.1016/j.copbio.2016.04.003. [PMID] 27089218.
2016
CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets.
Bioinformatics (Oxford, England). 32(20):3210-3212 [PMID] 27354701.
2016
Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification.
Methods (San Diego, Calif.). 96:6-11 [DOI] 10.1016/j.ymeth.2015.12.002. [PMID] 26687239.
2015
CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data.
BMC bioinformatics. 16 [DOI] 10.1186/s12859-015-0759-x. [PMID] 26537300.
2015
Increased expression of the immune modulatory molecule PD-L1 (CD274) in anaplastic meningioma.
Oncotarget. 6(7):4704-16 [PMID] 25609200.
2014
High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.
Methods (San Diego, Calif.). 68(3):492-9 [DOI] 10.1016/j.ymeth.2014.04.017. [PMID] 24784529.
2014
Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth.
PLoS pathogens. 10(2) [DOI] 10.1371/journal.ppat.1003946. [PMID] 24586159.
2014
Increasing the Content of High-Content Screening: An Overview.
Journal of biomolecular screening. 19(5):640-50 [DOI] 10.1177/1087057114528537. [PMID] 24710339.
2014
Nanoparticle vesicle encoding for imaging and tracking cell populations.
Nature methods. 11(11):1177-81 [DOI] 10.1038/nmeth.3105. [PMID] 25218182.
2014
ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments.
Bioinformatics (Oxford, England). 30(23):3440-2 [DOI] 10.1093/bioinformatics/btu554. [PMID] 25150250.
2014
ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.
Cell reports. 6(2):313-24 [DOI] 10.1016/j.celrep.2013.12.032. [PMID] 24440720.
2013
A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax.
Cell host & microbe. 14(1):104-15 [DOI] 10.1016/j.chom.2013.06.005. [PMID] 23870318.
2013
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment.
Journal of biomolecular screening. 18(10):1321-9 [DOI] 10.1177/1087057113503553. [PMID] 24045582.
2013
Niche-based screening identifies small-molecule inhibitors of leukemia stem cells.
Nature chemical biology. 9(12):840-848 [DOI] 10.1038/nchembio.1367. [PMID] 24161946.
2011
Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice.
The Journal of clinical investigation. 121(2):784-99 [DOI] 10.1172/JCI43757. [PMID] 21266779.
2011
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.
Bioinformatics (Oxford, England). 27(8):1179-80 [DOI] 10.1093/bioinformatics/btr095. [PMID] 21349861.
2010
Screening cellular feature measurements for image-based assay development.
Journal of biomolecular screening. 15(7):840-6 [DOI] 10.1177/1087057110370895. [PMID] 20516293.
2009
Extracting rich information from images.
Methods in molecular biology (Clifton, N.J.). 486:193-211 [DOI] 10.1007/978-1-60327-545-3_14. [PMID] 19347625.
2009
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning.
Proceedings of the National Academy of Sciences of the United States of America. 106(6):1826-31 [DOI] 10.1073/pnas.0808843106. [PMID] 19188593.
2008
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.
BMC bioinformatics. 9 [DOI] 10.1186/1471-2105-9-482. [PMID] 19014601.
2008
High-throughput screens for fluorescent dye discovery.
Trends in biotechnology. 26(10):527-30 [DOI] 10.1016/j.tibtech.2008.06.008. [PMID] 18706725.
2006
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen.
Cell. 124(6):1283-98 [PMID] 16564017.

Contact Details

Phones:
Business:
(352) 413-6372
Emails:
Business:
acarpenter@ufl.edu
Addresses:
Business Mailing:
PO Box 100278
GAINESVILLE FL 32610
Business Street:
1600 SW ARCHER RD
GAINESVILLE FL 32610